Scaffold Ga0183683_1000414

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1000414
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23779
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (84.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F015102	Metagenome / Metatranscriptome	257	Y
F032681	Metagenome	179	Y
F037208	Metagenome	168	Y
F103094	Metagenome	101	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100041421	F015102	GGA	MQEESDNAQDKNAPFDDVTHWVGNLPDKDNDSTKRTLKRYSWWQTQSNIFRKKLGMETKRKK
Ga0183683_100041424	F006217	AGGA	MIELLLSVIEEPNQIHKYCMSKHEHWTGRAACVQELQHAQRKLEVERLRQFLKENPHYKYPGMALPNGKIKPLDVCWGSDKTYYIGSDKQKRSKC
Ga0183683_100041425	F103094	GGAG	MAKKAHEKLNIEVALSSEHSCYVSVKGYTIYVEVSEATNNKPYISFWKKGWKDDRAVTLS
Ga0183683_100041432	F032681	AGGAG	MTKAFSAENIKKVQDLAKSLKLEVGMSTSMAVEEAMTYLTMSFHKRNVDSIKAAELLRWWLSEFQDKELEYFQTRVDLAEQVRNR
Ga0183683_100041435	F037208	AGGAG	MFVILATKPTQDGCKGFRFNFLGIKGIYRKRSIIRRWGRQEGDCMLSYHFGKRSLYIEKSANTRTRRKFRHVAG