Scaffold Ga0183683_1000360

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1000360
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26447
• Total Scaffold Genes: 34
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (14.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009442	Metagenome	318	Y
F016521	Metagenome	246	Y
F054791	Metagenome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_10003601	F016521	N/A	MKPLLYLWDMNETQTHNTMQKTSTKGKDLAWDIATRLRANQFKDMTLGEIDDFRAEMAKFLDLKKEW
Ga0183683_100036011	F009442	N/A	MTLRKVKRMLNESDDFLVFTRTDTGEDVANFGVFHKDNESWEILLNLAVSDYHVRETLRNVLTAADAYRDQQAQDESE
Ga0183683_10003607	F054791	GAG	MNSRAREDFDFWFTENYDDLSNVARRLHPDSFDLLHHTYLSCVLALRRNKNILDNLPGYVHTSMWNLSTGTFRKLYKITDAPNYTHISNYDIQEAIRKEEALIMANHLSWFDRNVLELYLDGWSMAELSRQSGIDVNVLYKSISTSKKKLRNVICQRAPKS