Scaffold Ga0183683

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1000337 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029309 Open in IMG/M

Scaffold ID

Ga0183683_1000337 Open in IMG/M

Source Dataset Name

Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	27570
Total Scaffold Genes	43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (60.47%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

27570

Total Scaffold Genes

43 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (60.47%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

South Pacific Ocean: TARA_100

Coordinates

Lat. (^o)

-13.0023

Long. (^o)

-95.9759

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004325	Metagenome / Metatranscriptome	443	Y
F027869	Metagenome	193	Y
F071303	Metagenome	122	N
F072439	Metagenome	121	N
F090494	Metagenome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100033710	F090494	AGG	MSTKHTESMKAFQKKHNLSFQNFFTIGSNPKIEKNNKIEEIPTACLMLMNTPKACPAAGSCRSVCLMTSGNPVYLDGKIKCRIRRNNAFMNDYQMFLRYLVINCFRHYFKNKTSKLVSFRLNGVSDYPWESISVHLTQEDTDYIQKAFNIYIEPIRYGSVIEAVQKGLNLDNNQVLRNFVQFYDYTKRVDRRFDIAKKLNYHLTLSHGSKFDTFSKAIEKGLNYAAAFNLKKSQSLPKTFTYKGRELTVIDGDITDCRFLDINTDTHIIGLRFKIVENKDNAKKLEFCIDSYKG
Ga0183683_100033713	F071303	N/A	MVQFVNLNRNLKNPADKAVFQGKNPANKTTGPNTGGFTPSGDPAGLADPWRATLDKNPLNEDFYQSSYTFAGQSEDAQRRLDGLQFEFGNSFEEGNNAFASEFVRKYAAAVGGSNTAEGKEMIERDRIVRPENLAQLSSQPATGGNAVQDPNVAGKFPSQEVNV
Ga0183683_100033725	F004325	GAG	MKHKKKASTTEKADKFLQGIGTAGGPIGSPQLVGFGGTDTMNQLAAGNRDEYANIRMREGDTRIVEGAKMPSDLDASYLKLNLPGSPLPANGLLAPQNLRAAEQNQDFIRSQEQMFLAQYLPAAGLSQLPVGQPALESKKGKK
Ga0183683_100033726	F027869	N/A	MKHAKAKQAKGKAEKALAQMAMEAEMAKASESDLQPEDGYINPMGRIGVVRPTTYSLTNQLDGTTTQSVINPET
Ga0183683_100033731	F072439	N/A	MILPTTKLGYTLGIRRDKDIISPRERQKASPFKGRRRTRMAGEKRVDIFSVRPDEAPFSYTKGTNLPKRFTQTLDIPIDREEEN

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0183683_1000337

Overview

Ecosystem & Geography

Associated Families

Sequences