Scaffold Ga0183683_1000334

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1000334
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27873
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (9.09%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011351	Metagenome	292	Y
F017932	Metagenome	238	Y
F025720	Metagenome / Metatranscriptome	200	Y
F077934	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100033417	F017932	GAG	LKVKPTFFNTRHDRLHWDYIDTNNYLFTILFDSGANLHFILRDLKKNESILNYIYKKLHSRFDNIIEIHTSRMSNVEYNLMKQQKIPSVIKIC
Ga0183683_100033426	F077934	AGG	MQSKWGWYNVLYSLSNSILDIEKITRLPILEVLTYLAYSQDYNNKQKSNYDKF
Ga0183683_100033431	F011351	N/A	MELKKYIESTSKLIIPTIDHIQLVEHKNKELDFAYGMQEYHTSIKRMFKQLYRIIFR
Ga0183683_100033437	F025720	N/A	MAWKLKKEWVGKSIDSINIPLDDLTQKQILALRESVRNHLFIKESKKKDAKVKK