Scaffold Ga0183683_1000223

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1000223
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33161
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (65.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001942	Metagenome / Metatranscriptome	613	Y
F002716	Metagenome / Metatranscriptome	535	Y
F013639	Metagenome / Metatranscriptome	269	Y
F018155	Metagenome / Metatranscriptome	236	Y
F037180	Metagenome	168	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100022325	F037180	AGG	MSDLAKIDDKSILHISLSYLIQIIAVISIAVWGYASIAEKIEKNKQELKNLRGNQNNYIFPDIRTLEKQVIKLEKEVLILKTEIEAIKKND
Ga0183683_100022327	F001942	N/A	MTKKTSEQHQSNSRLGALGESLVQTFLLEHCDWCYPTQEKHPADLLVELGSAKFTVQVKTRRETKEGKYVFATENSRNMSEVYKQYHCDIFAFVFVSDSAKRIKFQPNNTSQTYYTFNNKHINPTLEIDTLQETLNQLSSVPVINKL
Ga0183683_100022336	F018155	AGG	MSQNKEAVEKRRKELAQEKLDKQIKYIYFQKGAGEHYEEVAYMSGRIVRTDYGQL
Ga0183683_100022348	F013639	N/A	MKIDKDKLQEKIKQGKSSHDVAMTFGCHPSTVRRKAKELGLKFKTKSYWRKYES
Ga0183683_10002239	F002716	GGAG	MSQYRLETEEDMSSYLDINFGHGVSAVYTVGGSSTTINIIINNEYVEQVEGTGVEALKPIAYCRTIDVPNIAFGNTLNVSAIKDVDGNTLKAAQNYTIVNVQSDRTGFSALMLEEI