Scaffold Ga0183683_1000197

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1000197
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34600
• Total Scaffold Genes: 66
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (65.15%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015871	Metagenome / Metatranscriptome	251	Y
F044791	Metagenome / Metatranscriptome	154	Y
F044804	Metagenome	154	N
F084853	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100019720	F044791	AGG	MSEKKYSNNVKVYDELKKISDAPNQKKQAIKSSQKAATAALGSVVLNTPVVSSIKEKIESKINKIPFSNNMLLSTNKIGLKLGGETYKGSFTVNKDGNASLNLSKAFTKDLQTELSADKDKVKVGLSLKF
Ga0183683_100019738	F015871	AGGA	MTTDERAYYITDRIFWIMVENTHPSNLGDYIEPDPNNPEGTRNTERGQELFEELKEFVRNTI
Ga0183683_100019746	F084853	AGGA	MKKTVKCPECEGKGYIEWGDRYDEIEECHICEGHGEWLEDEEEMDKIYPEITDEEVNVMYEDYSIAEAIKERIRNDKDYTYA
Ga0183683_100019757	F044804	N/A	MGWKMRIVKDPFTGELLLSLDNFESKQVRDKGYVKISNHSSFFGSLRLLYEDLSTIITEELRNIQLKKEKKEHEKLLNK