Scaffold Ga0183683_1000105

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1000105
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51660
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (84.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008114	Metagenome	339	Y
F008731	Metagenome / Metatranscriptome	329	Y
F051861	Metagenome	143	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100010530	F008731	AGGAG	MFVLFATKPLNDGTNGFRFNFAGVKGLTRKRKHASRGFKITRNDCMTALHLGKRTIYVEQKFNRNTKRKLCHFAG
Ga0183683_100010532	F008114	AGGAG	MKLTINTNAFPDVPEEHLKEMLGILPYWVREYNLLGEGMDILNFMTERYGFGSLHQFKGGVQEDGTYSYPEDPDLPYIGKMNTPNGYVYFYQYAMLALPLPNGEYFVTRMD
Ga0183683_100010536	F051861	AGGAG	MIIEDQTVEVKVWDHNDAVIFVYESIHEKTDELHEGVPVWKGYKKVLTAIPVNFCYGSLSKDEQLDKVCKVADALSELYSDDDSNEIGVSYYINHDPYVNC