Scaffold Ga0183683_1000069

Overview

Basic Information

• Taxon OID: 3300029309
• Scaffold ID: Ga0183683_1000069
• Source Dataset Name: Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59385
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 76 (75.25%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: South Pacific Ocean: TARA_100
• Coordinates
  • Lat. (^o): -13.0023
  • Long. (^o): -95.9759
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014803	Metagenome	260	Y
F026922	Metagenome	196	Y
F061901	Metagenome	131	Y
F089158	Metagenome	109	N
F094089	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_100006910	F061901	AGG	MEMLTNLFKKILGLDKLDYRIRCLERAKYWREKYKRRKT
Ga0183683_100006923	F014803	N/A	MPPVYMGGGCVLMRCQNKRIQMNKEQKEIIKRINKAYSKLYILSNITWTPHRDELFKMNRKDEKQHRFGDWAEYHQGAASINDCAKLFTVKHIAESLLNLNKWGVKDLLNIKKSCVYSQSLVNNYGDRIREAWIDEDIKYLADLDYIALVNWDLYQEQKNRKIA
Ga0183683_100006928	F094089	N/A	MKIKELIKKLKEYDFEKEIVIYSCDSDLIQYETLGFYENEGQVELHIDEGIKL
Ga0183683_100006929	F089158	AGGAG	MKNSVVTWHGCENYSMNCSIEDLEKKGFECSSWNNDLAPSYTNKKGNIQIFFFDLDSDEMKAESMKHKFSVMKLDEHGEYQVHIGTTNSFEEMLKMVEGNE
Ga0183683_100006934	F026922	AGGA	MKHLKIDTEEVRFLINSYEDWYNTFDKDGYKYVIEQLNFDNKYYDDILSSLHNFVKGGEFYPIKIKQERKQ