Scaffold Ga0135226_1005939

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0135226_1005939

Scaffold Ga0135226_1005939

Overview

Basic Information
Taxon OID	3300029308 Open in IMG/M
Scaffold ID	Ga0135226_1005939 Open in IMG/M
Source Dataset Name	Marine harbor viral communities from the Indian Ocean - SRB2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Michigan State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	825
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location Name	Indian Ocean
Coordinates	Lat. (^o)	3.715	Long. (^o)	105.408333	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023880	Metagenome / Metatranscriptome	208	Y
F068937	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0135226_10059391	F068937	GAGG	MNQRATEYNLNKEQFERLLDLYIETIVDSMSLEDFQQYVRDDMNDFLYKCSESEVINEIKYTLDDEMLEEFVKQIKGKITD
Ga0135226_10059392	F023880	N/A	MNKEHTYAAQMELTNVPEDSLKQWTNMPPISEELYQELVKEFNNERLYFFNDSYNLED

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.