Scaffold Ga0135212_1004927

Overview

Basic Information

• Taxon OID: 3300029306
• Scaffold ID: Ga0135212_1004927
• Source Dataset Name: Marine harbor viral communities from the Indian Ocean - SCH3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 975
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location

• Location Name: Indian Ocean
• Coordinates
  • Lat. (^o): 1.26600833
  • Long. (^o): 103.8333333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015346	Metagenome / Metatranscriptome	255	Y
F059941	Metagenome	133	Y
F063682	Metagenome	129	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0135212_10049271	F059941	GGAG	VKLGTLVQFKAYDIVLDMGIISKYDEDPGFVWVECAKQGPQRVNVNNTMMEVVNEAR
Ga0135212_10049272	F063682	GGAGG	MKPGDLVRIRKTSIDHLSANWFIWHAEHKTPLVLIEELNKSYWKVLKPDGNTVHIHKTHLTTRMY
Ga0135212_10049273	F015346	GAGG	MNPEWTQYRVGDLVFAGTSRVPGLVTKSNYWALDEYLGGEIECIDVMFGGHESKQYPVQYLETMP