NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307249_12604126

Scaffold Ga0307249_12604126


Overview

Basic Information
Taxon OID3300029305 Open in IMG/M
Scaffold IDGa0307249_12604126 Open in IMG/M
Source Dataset NameGoal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)702
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4204Long. (o)-119.6671Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067282Metagenome / Metatranscriptome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0307249_126041261F067282GAGGVISLETPQRKWASSRLEVRTSWIFSSCGRCSQLTKGTIGTRSVGLRKGQSPCELLGGLSGFLSRRCRGLRPCVESVLEPEDSSPVLTWILGYFWSLPRGVSPGLEFGYARALSSRALAALSRFPSRGTRDLWLSLEAFPRGFPMNPSHRPLPRATMV

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