Scaffold Ga0119857_1019873

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0119857_1019873

Scaffold Ga0119857_1019873

Overview

Basic Information
Taxon OID	3300029304 Open in IMG/M
Scaffold ID	Ga0119857_1019873 Open in IMG/M
Source Dataset Name	Anaerobic bioreactor microbial community of Freshwater lake and wastewater samples from Australia - AOM-metagenome-Illumina
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Queensland
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1089
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Bioreactor → Unclassified → Unclassified → Unclassified → Anaerobic Bioreactor → Anaerobic Bioreactor Microbial Community Of Freshwater Lake And Wastewater Samples From Australia

Source Dataset Sampling Location
Location Name
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020376	Metagenome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0119857_10198732	F020376	GGAGG	MDKKKGTVREQWMQRTEAAYQRMFEGKGQKELATLTQREDMAVSIGKELAAFLLEEHVALDPAAQPAEASSTCCPKCGQAGIPAVRENEELVERSVTTRAGDIQLRRQRWWCAKCRIVFFSARRSAWFGDGRL

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