Scaffold Ga0135227_1027166

Overview

Basic Information

• Taxon OID: 3300029302
• Scaffold ID: Ga0135227_1027166
• Source Dataset Name: Marine harbor viral communities from the Indian Ocean - SRB3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 614
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location

• Location Name: Indian Ocean
• Coordinates
  • Lat. (^o): 3.715
  • Long. (^o): 105.408333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000999	Metagenome	809	Y
F004618	Metagenome	430	Y
F056146	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0135227_10271661	F000999	AGG	MDRDKLMARTDFVVSWYAKKYNKVIFRIGNLNKEGCRTWESNGKKYMCFWDTVLERYTTCIDRDWETTK
Ga0135227_10271662	F056146	AGG	MYNTLLYIGLTLMAVGFVGWVVSICMERHYEVKLWELEQKRKAQNGQR
Ga0135227_10271663	F004618	N/A	KDWARELVDREIRRRPEGLKLKQLEDLKTKAIDQVMESGTPEELIRQLDATTKKIGIAWVVDTSKIKQISAN