Scaffold Ga0135227_1000204

Overview

Basic Information

• Taxon OID: 3300029302
• Scaffold ID: Ga0135227_1000204
• Source Dataset Name: Marine harbor viral communities from the Indian Ocean - SRB3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1782
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location

• Location Name: Indian Ocean
• Coordinates
  • Lat. (^o): 3.715
  • Long. (^o): 105.408333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F067698	Metagenome	125	N
F088831	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0135227_10002041	F088831	N/A	LFPSHDHTIYKWIAKGEQPRAQKIFKTFAEKVRAADAHAAMTALDTINHSIQEGDVKSAMWLLSRRHGYKNDAQHAIPEAEEETQNQVGSLDYRTMLTIQISELKQSMNKAKDSGSWQAYAALQRQLVTMMQALKAYDAEEGALDAHERMTDEQLMSEIVNTIIALPPILRQRVQADLHSLVGSNVVALKKA
Ga0135227_10002043	F067698	AGGA	MVEIILAGLIGVILGVGGAKALENNKPAIEDTTATKQQEVIKQLTDLDVIKEICNPEQTKTQEGLLLCREMTCLIYTRGIDSQTSGKQCEEISNIQNTMSMIEYCNEQGDGSLCTDLFWRRK