Scaffold Ga0135222_1001211

Overview

Basic Information

• Taxon OID: 3300029301
• Scaffold ID: Ga0135222_1001211
• Source Dataset Name: Marine harbor viral communities from the Indian Ocean - SRH1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Michigan State University
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1470
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → Circular genetic element sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location

• Location Name: Indian Ocean
• Coordinates
  • Lat. (^o): 1.26600833
  • Long. (^o): 103.8333333

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001611	Metagenome / Metatranscriptome	663	N
F007722	Metagenome / Metatranscriptome	346	Y
F013311	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0135222_10012112	F001611	AGGAGG	MPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATSDTFLNVSVNNAEYSKDVSVPALVSGQPFGVLNGAYLNNDLLTTGSQRNRVLVRFTNDTGATRTIRCGVFIG
Ga0135222_10012113	F013311	AGGAGG	LAFLGDFGKFFGLGSSKEVLGDVGGAVGSLVGLEGAGRRAGEFVGQATSNLSGSGTSQVSPFSTADQALEQSAVSVSDRGNVPQETSSQLGTTGLPVQMAGFGMIPGAIQGLRGLAPQVSKFFGGTTGAVATGLGTGVAVNMLSGQDMKQKPVLTQSRRNKARVRQLVNFMGIEGTAQFLSQSSGVTVTPNDVVMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRPAMRRASSTTLIKN
Ga0135222_10012114	F007722	N/A	SVVSQSRSPKLLNSVKGLDWDTIACLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYAMKQQNNVTDIRKNNIGG