Scaffold Ga0265297_10095507

Overview

Basic Information

• Taxon OID: 3300029288
• Scaffold ID: Ga0265297_10095507
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2388
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039036	Metagenome	164	Y
F043917	Metagenome / Metatranscriptome	155	Y
F058173	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0265297_100955072	F058173	AGGAG	MKMQYWIVLGIGVAIIIVAAFFWGRYHPDPDVIGRLTDQIRLETIKQYDQRIADLNSQLKVSQTAYIESQKRYDTIIKKIKELKDGKDNIKPPVDSVELNNRFNALGYTPTGK
Ga0265297_100955075	F043917	GAGG	MNPCDWWLKIYEIWMDLVFEVNALRNCYNQNKSELPKIKELLIKEEIWK
Ga0265297_100955077	F039036	N/A	MKTVLRYIGVYFSKPIWSFIRNCVFWLFRLNDVNEVRKIKADIKYLSIETLMERFIWKEDAGGDWTPWVMTIIGQSFKDDCDGAAALAKWWFKQNGVEAEILNFYSATEGHTICVTKDRETMVTNERVVMLHPDNWKKEVLEYFNNKYEVII