NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265297_10022985

Scaffold Ga0265297_10022985


Overview

Basic Information
Taxon OID3300029288 Open in IMG/M
Scaffold IDGa0265297_10022985 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6445
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → unclassified Parcubacteria group → Parcubacteria group bacterium ADurb.Bin216(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020914Metagenome / Metatranscriptome221N
F067770Metagenome / Metatranscriptome125N
F078767Metagenome / Metatranscriptome116N
F099361Metagenome / Metatranscriptome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0265297_100229853F099361GAGGMNIKNTDSISILIANSGNQKKYHPVSELKADILADVEADAAFQDIIIQGVLSKVAAPVLTTESTIIGQDVNPAIAIEITKNTFIEGDSENAGNWIIDFGKTDLILNTIAKLSATEMRITTTGTAKVGTIRILALKACFDAPIVDSNVLEIEVPKI
Ga0265297_100229856F020914AGGAMAIYEKYGFAIDQILSENQALPNATSGDSTNTIKLDAVADDGLHIVVCAASTTVELASGATLEIRPTIGATDGTVTTVLPSILITEGVQSDVSWAPGEMICQFNIPAKLIGSARYLKLTYVTSANESADKVEAFSVRR
Ga0265297_100229858F067770AGGAMIEFRYNSPIFKLGKISRSEWRELGMSARSEIVKRTRSGIDINHQPFHEYSAATQEYKSGIMQARGLGSSVVTLQDTGQMHRSLSVEVQANAAILYYADQNRARVALLHQTGGFHLPKREHFGFNKTDGDRYLERIAKLQTIKNKKANR
Ga0265297_100229859F078767AGAAGGMTNQITGITDEILAALREAGCRTVGILPEVLMFSGNNNPFGFILLNSETTENDNGGILTQLLDISIFIITQNGINKTKEHCNVLYAAIGEILNSSGLNSKTALVNLETINWHADMPFVTQLVGDLDIISSINFNIKYMNAR
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