Scaffold Ga0265297

Basic Information
Taxon OID	3300029288 Open in IMG/M
Scaffold ID	Ga0265297_10019962 Open in IMG/M
Source Dataset Name	Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029288 Open in IMG/M

Scaffold ID

Ga0265297_10019962 Open in IMG/M

Source Dataset Name

Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7164
Total Scaffold Genes	11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	9 (81.82%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

7164

Total Scaffold Genes

11 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

9 (81.82%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Ecosystem

Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Waterloo, Ontario
Coordinates	Lat. (^o)	43.442	Long. (^o)	-80.577	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Canada: Waterloo, Ontario

Coordinates

Lat. (^o)

43.442

Long. (^o)

-80.577

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039448	Metagenome / Metatranscriptome	163	Y
F075591	Metagenome / Metatranscriptome	118	Y
F078142	Metagenome / Metatranscriptome	116	Y
F098516	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265297_100199622	F075591	AGG	MQDLAKLSELAQAEIDSLQADGINLTPAEIIELNALGWAVESPETRRLLARGAPVEIGGVYLWPMSLYAQEWFSRVGCQLSDNTRRAYALAYAMAHQYDEGEPLAIDGRTAEKVVARWAKTLRCTFDELNIAISQILQQDEEAEQPPDETGGMSIGDFSAFLASAFPAGSPDFWERRCAAGYTYAVLDAMVRQNSAEKKKTMADPRIKAERALGWAVEKIRKSRKKAG
Ga0265297_100199623	F098516	AGGAG	MSIDKATSFGALTDHFAILEIAGMSDILKLVSSSKVPRAQERADAQDENEDIAASAYHGNSAGEIYEISSTFALKSGTLTLSDLNIGELVAGTVAESLGLTTANGAWPQLTVSGFLGLETITAPTGKTNKFTLPAISVLGIKQAQCLGFTVSAGKLTGSSITFNCSLAEQQDGLGEPVAHGVSGGTGELTAEFVRILTAPAWALAAVLTAAEFLAEVTQSPGAEEGQAAWHTATGAASFIVPRLAA
Ga0265297_100199624	F039448	N/A	MNVSKAIELAMAETIRKYAQLGEEVTIRAWQSLESDGSWKENPDRSFPMIDVRCSPPKTDDNESSQQVECAILFGTKTDDDKSHAFVSAMYEAGQGICDKLFKQYRTGIFTDTEIAYFISKVETEAGTDVFTFGGFTFGEGLSPSDENGVNMIGITMIVHFGRSDF
Ga0265297_100199626	F078142	AGG	MGLETEAFDAIYNTLALSRCQLRIGRTVIAKALCSGIGINRENTERGQYGGIDANVRLLSADEPDGEIKNGTVIEILQNGKNEKTGWIKARTGGRYTIGGLTRLTLEAEYE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0265297_10019962

Overview

Ecosystem & Geography

Associated Families

Sequences