NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265297_10002554

Scaffold Ga0265297_10002554


Overview

Basic Information
Taxon OID3300029288 Open in IMG/M
Scaffold IDGa0265297_10002554 Open in IMG/M
Source Dataset NameLeachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36493
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (74.51%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Waterloo, Ontario
CoordinatesLat. (o)43.442Long. (o)-80.577Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092957Metagenome / Metatranscriptome107Y
F096508Metagenome / Metatranscriptome104N
F096520Metagenome / Metatranscriptome104Y
F102391Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0265297_1000255422F092957AGGAMTLRGLASMAARRYADTTCDVIYNTLTPEDDGSSSVTTVTLTLKASIKPLQPVDIKRLREGGIEVQEGVSILISEALEERPEQIEADGKKWRVLSWSFIPAYENESGNPIGTVVAACDEIRVNPAATE
Ga0265297_1000255426F096520AGGAGMKSIYIILMMAVSFFRELFCLPAARAANATQESLTVIIGRCVATFTAKLSGQSLSFGGDTFYNEEDLLGDITLDTERGKRHMAADGSRGVLILSIPRAGTREVKFLLGDNLDLLKHWGQAKIQTLFDFDFYYAYNTQSNEGARIHRHKNCYFTKMPLPGVGRDRGYVTAEISFEDVAEIDPLTDKEV
Ga0265297_1000255433F102391AGGCGGMAFMLDSDGNIVVNASTGLAEQVTDLQSLEQDAMSECRCEQGGNFTDSTYGRNPLVWKLSQSSADRIADVKRIVSKYYNPYSITYENGIITVN
Ga0265297_1000255445F096508GGAMKKTRVKPAELLKLLDKHDLQKYDICKICNVSAATAERYIKYGIPDAQYRLMQLSLGDL
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