Scaffold Ga0265297_10000491

Overview

Basic Information

• Taxon OID: 3300029288
• Scaffold ID: Ga0265297_10000491
• Source Dataset Name: Leachate microbial communities from a municipal landfill in Southern Ontario, Canada - Leachate well 137-91
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 115272
• Total Scaffold Genes: 227
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 151 (66.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Engineered → Solid Waste → Landfill → Unclassified → Unclassified → Landfill Leachate → Leachate And Groundwater Microbial Communities From A Municipal Landfill And Adjacent Aquifer In Southern Ontario, Canada

Source Dataset Sampling Location

• Location Name: Canada: Waterloo, Ontario
• Coordinates
  • Lat. (^o): 43.442
  • Long. (^o): -80.577

Associated Families

Family	Category	Number of Sequences	3D Structure?
F053745	Metagenome	140	Y
F064378	Metagenome / Metatranscriptome	128	Y
F065403	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265297_10000491107	F065403	AGGA	MANISAPTWGSATLPFPSEAVITPLWISADNITLGGKTRRDVMARKYQYTMRWDYMSVTDYNNLETVINGLVAANFTYGKWPQSATAVSCLGTLSARTLMVGVGDSTYYSSVTLTLTEVSSRI
Ga0265297_10000491111	F064378	AGGA	MSVTATNINTGGAVVKVGGRVNASPNADGFYDMDVLGTDVGCTNGGVTVTYTIETSDIFCDQVTSPVQVAVTGETATVEFSMLESTAQNLDLVLGGGSVSKDATSAYYVGIGGVVGAAFEPLQLIITDNDTGYLTTWTFFRCHPGGITANFERENPTAFGITFTAYAETSHASGKQLFQVKQAKS
Ga0265297_10000491113	F053745	AGGAGG	MTTEVKVTHDPEGSLIKKPSYLIELENKWKRWTGIEDREAFEALKDLSGDLWSELRKLEAQLCKEIENRNMPEDFKEFTKARIRDTWRDIIGHQKIGLDKLCIVVRKYLPIGKEKEE