Scaffold Ga0247842_10034771

Overview

Basic Information

• Taxon OID: 3300029268
• Scaffold ID: Ga0247842_10034771
• Source Dataset Name: Freshwater microbial communities from meromictic Lake La Cruz, Castile-La Mancha, Spain - LaCruzMarch2015_19m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 3747
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Spain: Castile-La Mancha
• Coordinates
  • Lat. (^o): 39.9879
  • Long. (^o): -1.8737
  • Depth (m): 19

Associated Families

Family	Category	Number of Sequences	3D Structure?
F039448	Metagenome / Metatranscriptome	163	Y
F075591	Metagenome / Metatranscriptome	118	Y
F098516	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0247842_100347712	F039448	AGAAG	MNVSKAIELAMAETIRKFAEMGEDVTIRAWQSLEADGSWKENPDRSFPMIDVRCSPPRTDDNQSTLQVECAILFGTKTDDDKSHAFISAMYEAGQGVCDNLFSQFRSGTYDGDEIKFFLDKIDEETESDVFKFGGFTFGEGLSPTDDAGINMIGITLIVHYGRSDF
Ga0247842_100347713	F098516	AGGAGG	MTVSKATSFGALTDHFAILALEGMSDILELVGSSSVPRAQNRADAQDENEDIVASAYSGNSAKEIKEVSCTYALKSGTLDLSDLKIGELTPGTLATSLALTTANGAWPQLVVSGFLGLETIVAPTGFLNTFSLPAITVIGAKRAQLLGFTTSAGRMTGSSISFTCEMAEQLDGLGEPVAHGVSGGTGEVTAEFVRIDTQPAWALAVILTGTTFLAEVTQEPGTEEGQAAWHTSTAAAAFIVTRDAAA
Ga0247842_100347714	F075591	AGGAG	MQDLARLSDLAEAEIESLRADGIDLTPAEIIELNALGWAVESPETRRLLARGAPVEIGGVYLWPLSLYAFEWIGRVGCNLEGKPHQTYAVAYAMAHGRDDGDPLAMDGREAGKIVTRWAESLKCTLGELQIAIGQIQQQDEESDQPPSETGGMTAGDLSALLAASCGGDPEFWERRCAAGYTYAVLDTLCRQNSAEGHKTMADPRIKAERAMGYAIEKIKKSRKEVTQ