NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0168097_1018737

Scaffold Ga0168097_1018737


Overview

Basic Information
Taxon OID3300029255 Open in IMG/M
Scaffold IDGa0168097_1018737 Open in IMG/M
Source Dataset NameBiosolids microbial communities from sewage treatment plant in Sweden - SWESTP9 - Uppsala-digested 110
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Gothenburg
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1846
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Biosolids → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Source Dataset Sampling Location
Location NameSweden
CoordinatesLat. (o)59.844519Long. (o)17.659844Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021262Metagenome / Metatranscriptome219N
F024321Metagenome / Metatranscriptome206N

Sequences

Protein IDFamilyRBSSequence
Ga0168097_10187372F021262AGGAGMNKRYYVKLTTGKELTGTSKEIVTQLRNESRLMAITPRKYAKLIAKSYKMSTGLKLRTWTYDSFMKSLGRSLMAIEFEEIK
Ga0168097_10187374F024321GGAGGMLEEILMIIAGMAGLGAFVSMLVNLLKAIGLIKDGQGDKAFKIADLIVFVAVTVVYLLKVQVDWAQVNEWLVLLTALLGYVVSVFSGEFTHDTIKGTPLIGYSYSEKKLK

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