NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0167179_1008393

Scaffold Ga0167179_1008393


Overview

Basic Information
Taxon OID3300029252 Open in IMG/M
Scaffold IDGa0167179_1008393 Open in IMG/M
Source Dataset NameBiosolids microbial communities from sewage treatment plant in Sweden - SWESTP26 - Henriksdal-digested 138
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Gothenburg
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2745
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Wastewater → Industrial Wastewater → Unclassified → Unclassified → Biosolids → Sewage Microbial Communities From Wastewater Treatment Plant In Sweden

Source Dataset Sampling Location
Location NameSweden
CoordinatesLat. (o)59.310676Long. (o)18.108437Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015605Metagenome / Metatranscriptome253N
F045118Metagenome / Metatranscriptome153N

Sequences

Protein IDFamilyRBSSequence
Ga0167179_10083931F015605AGGGGGMLDTLKLMLSEYKVSPESSLRVQPASYEVATGEKVEFPLFRNEAGTFYGSKAYLNTENWNLTLKPLPAGNRGTGAFLQFSVPKNYYGSNYFSVGEAGTRASLKKVEGELAENGVLTNLEEAELSRVDTFKNIEPEEPFCSYFSLFSLLRARRAQQRGYGTTFLLSNSSQEFCIYNKLEEMREHGEETSELPETMRF
Ga0167179_10083936F045118N/ATTFLVANSSQEFCVYDKLQEMREHGEETSELPETMRFEHRALTKRKVSSLYGFTRAGELFHGGYEVVREKQLESWKSSLFSFSAEEVVVLGSKQLEQEMRFFQEKFGANWFQYFLKSYGAYSLAKFAGKEVVRNALENLNSERTKVWRTMKLLEEAERELLVLKQEEGSSKTLGELYEELREKVCS

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