Scaffold Ga0168685_100127

Overview

Basic Information

• Taxon OID: 3300029230
• Scaffold ID: Ga0168685_100127
• Source Dataset Name: Human fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002668-39
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 113862
• Total Scaffold Genes: 96
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location

• Location Name: China: Beijing, Peking Union Medical College
• Coordinates
  • Lat. (^o): 39.911947
  • Long. (^o): 116.4156125

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043413	Metagenome	156	N
F055739	Metagenome	138	N
F068856	Metagenome	124	N
F102166	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0168685_10012747	F068856	AGGAG	MKRLTSILLALLMLVGMALAEETPDAALGDWYALNVDGTTECLTLREDGTFCYDSREGTWRKTTDGEYWLTFSRTGLLDVMASMVNSQVAEQDMTALLTENGLDVYYGSTAEGVVAHMVRDAEELQNVRTPKTDTPLEAFAGTWTMETVFAGAMQMTYTPDKGERLAFCTIDGLTLIPGANLGDYPEGTSYPMTFEDGILSATIQMMVLVSSGTEETQEIEMDYYLTFFQTADGSLYATLRLSDVPDNPTTMFLLIPME
Ga0168685_10012752	F102166	GAGG	MKKLFSLLLVLVLALALVPTLSLADDDAACQNLYNMLVDELKSVDLEMTADEESYRIYLGYALDKNSLGDADVIFDAYSDAVTINVSYSNPLDEALVPQVISFFNRVNSTLYVGKLMVIKSDNVWYAAYEIFLSVDPENITDWDRNNVLAYTALALDTMGEMVDYITEIANGESADNVFAMWQADIGAV
Ga0168685_10012785	F055739	AGGAGG	MTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRSIGLNRTMRIVITAVLMALMLTAVGVAAARFFSVTDVHPAQDGTEGDYQAHYLALEERYDSDLLSVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRVRGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDETGQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQHIITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELSGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRVYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0168685_10012787	F043413	AGGGGG	MTERELREKLQSAYGTMPDATRAAFEHSLTHHRVETRHPARMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVDVAMNVQPKAGKQVFMDMQVTAECEGQTYALEIEGCGGGDFMSGMFLPDETDSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADMLEAYVQNNWRQHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEQLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIDMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFIPIRNMGEKWDACHPDAEKGFTLELQE