NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0168686_100045

Scaffold Ga0168686_100045


Overview

Basic Information
Taxon OID3300029204 Open in IMG/M
Scaffold IDGa0168686_100045 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - RSZAXPI002669-41
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)196268
Total Scaffold Genes170 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)152 (89.41%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location
Location NameChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043413Metagenome156N
F055739Metagenome138N
F068856Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0168686_100045122F068856AGGAGMKRLTSILLALLMLVGMALAEETPDAALGDWYALNVDGTTECLTLREDGTFCYDSREGTWRKTTDGEYWLTYNIHDLPEVMERMVNSQAAEQDLTALLTETGLDVYYGSTAKGVVAHMVRDAEELQNVRTPKTDTPLEAFAGTWTMETVFAGAMQMTYTPDKGERLAFCTIDGLTLIPGANLGDYPEGTSYPMTFEDGILSATIQMMVLVSSGTKETQEIEMDYYLTFFQTADGSLYATLRLSDVPDNPTTMFLLVPME
Ga0168686_100045160F055739AGGAGGMTEQQLREKLQFAYGNMPDATRAAFEHSLTHHRAPETHRNIGLSRMMRIVITAVLMALMLTAVGVAAARFFSVIDVHPAQDGTEGDYQAHYLALEERYDSDLLFVSVNDAVYDGSVLAFTMEMAAKTDDVLAVEVRICGECDGKMYRFDPLDVYGGEFQSLLMLPDLGGTFDGEKYAAEGILLDETGQMPPEGKPIAWTIEIDVLKAVWQTETMPDDLYEALSEEDDVAQYIREQAEQHIITLTDAGVEDYLLEMCGAGWDEIEQMSKADLLLRCGGFERAETYTVAFATEGNTQYVHPELAGLRIPLDGYTAVVDYVRASFLGGCVVLHCEAPNGTALPNGTALPDVWRIYRNDEQNPAGEAGWARASGYAGVPGGVVDVNQPSICLYFAPCADLTSLRIVPEGEAGFTLNLSGEKGTE
Ga0168686_100045162F043413AGGGGGMTERELREKLQFAYGTMPDATRAAFEHSLTHHRVETRNPVRMSRRMRTIVTLALMLMMLTAVGVAAAKLASVTDYPPPSGLTPEYMSHLVALNEAYDGDLLTLSVNDLVFDGTTVEVAMNVQPKAGKRVFMDMEVTAECAGRAYTLEIEGCGGGDFMSGMFLPDETGSWSDSPFGFDGVLWDDDMQSPPEGVPIAWTMTFELLQPVWEVEYLPDAQYQALLAGGADTLEAYVQNNWRQHIITVTYGSLVEYQYAAEAAMLADGTITEPLSGSRTEKLLSCGGFRRADTIIVQFTTDFADDYAHPELVGKRIDMGDYDLVIDNVNLSFMRANITMHYEFSAAYTEDEIRQMTNLPNAWRVYVNGQTEAGYDAYANFQQVTNGAYGVDTPEQLTVGFDFYPAETDITRLTFVPIRNMGEKWDACHPDAEKGFTLELQE

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.