Scaffold Ga0168034_100003

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0168034_100003

Scaffold Ga0168034_100003

Overview

Basic Information
Taxon OID	3300029171 Open in IMG/M
Scaffold ID	Ga0168034_100003 Open in IMG/M
Source Dataset Name	Aquariaum water viral communities from Chicago, USA - Great Lakes - GLA2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Michigan State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	69849
Total Scaffold Genes	156 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (12.18%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Aquaculture → Unclassified → Unclassified → Aquarium Water → Aquariaum Water Viral Communities From Chicago, Usa

Source Dataset Sampling Location
Location Name	USA: Chicago
Coordinates	Lat. (^o)	41.87	Long. (^o)	-87.61	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F087386	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0168034_10000325	F087386	GGA	MTKEELFKKYSIKESHSEWNYSIDNWMSVEIYRIMHEGNLPPQDGSDTSVKWITDFLDKTEDVTFVKDLMSKGKFGSLYLTAHRMVYRYHQQLIS

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