NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0168747_100209

Scaffold Ga0168747_100209


Overview

Basic Information
Taxon OID3300029136 Open in IMG/M
Scaffold IDGa0168747_100209 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Rheumatoid Arthritis patients in China - SZAXPI012245-136
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)112860
Total Scaffold Genes115 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)106 (92.17%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Host-Associated Microbial Communities From Gut And Oral Samples Of Rheumatoid Arthritis Patients In China

Source Dataset Sampling Location
Location NameChina: Beijing, Peking Union Medical College
CoordinatesLat. (o)39.911947Long. (o)116.4156125Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077319Metagenome117N
F082715Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0168747_10020913F077319GGAGMQENAVCAANCTVQEMRGGQKIMLIRNATLQMSATERTCMDVRVMNGCVWEMGAALTKGLYESEINLHGDVLAAGRMLEKPIPAADEKALRLLCRKLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD
Ga0168747_10020925F082715AGGAGMMKFMKRSLSLLISAMLLLGCFALAEETPLLPIAIVSYDLTDEATTATLSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTAADYDAVGYGYIMGSSEQNGTWQVFFVKGNNVVSTVNLDARDATILLVEPDEEGNG

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