Scaffold Ga0169653_100213

Overview

Basic Information

• Taxon OID: 3300029059
• Scaffold ID: Ga0169653_100213
• Source Dataset Name: Human fecal microbial communities from mother in Denmark - 338_M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61554
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (26.19%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F044555	Metagenome / Metatranscriptome	154	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169653_10021340	F094005	N/A	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKKGTAILSNKVIITRTTNLEGQFTRLDGKGNAIILPCTPENEQKYNAFIAYHQSKKSLEAIKKWLDDNGKSQDDEILEKVITLDKKLKKLIEKLNE
Ga0169653_10021341	F032312	N/A	MARIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDAMVCLGFTWLKLLGVALMMLLWPIVFIYALNDGIEGYPFKKYAIPYTFILVAWFIIFLYGLVS
Ga0169653_10021342	F060985	GGA	MSNIDEKAKNNFTIEMRIFENYEKVKHEIIKAIDFLRHSGNCMGMCNLFKIMNHRLWENVIKPWFQPERFGITHVWFVFDHSKYFCSEEYLLSNGKLHTIKGIQWVEISLSLVFDDRRYGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0169653_10021349	F044555	N/A	MKTLSQITISQNDNQILTCEVYKEPNYILSMSNEEILEFISGLDYMGNLPTVPDLEKPIEIQVSTTRQIPLEQNKKVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDILQNPEDLVSLSPNTTKDK
Ga0169653_10021357	F101357	AGG	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSESDIQEYNEWLRANQYKLYPLLLDILKISLKDNFYNYSNTSNIHYEGGNFPSMLTIQVFNLEF
Ga0169653_10021360	F105375	N/A	MKNNEILQTTKHVDQLVTNLGLQIQELFSLDLKETMDYSNNLMNLLVNTYVENQCLALSAMISKQDGFAIYSFLFQTPDTSNGAADSLVRFAMNFTDGEANIKSINRISSNIMQITFTV
Ga0169653_10021362	F064817	N/A	MNIKNLFNRFRKREPELSYSLNLIYLEDTKVVFNQNIQCAKDLENYLSAYMRLFGMYSDKPYVLIYQEYKSRYWVYDKEPYLLYYKVPLIVNLSRKLSGKSDMVITKEKYQAAKGLVPAHEVSDRFKIPEYITGVFTDIWYKCQGYMDTDHVSLEEILELMQHNWLKEFELLVFKRNYDTDMLFLNHSLTYIRDQAEEEGRRICIQNIIERNINQENQDENETV