Scaffold Ga0169611_103252

Overview

Basic Information

• Taxon OID: 3300029058
• Scaffold ID: Ga0169611_103252
• Source Dataset Name: Human fecal microbial communities from mother in Denmark - 268_M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8776
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F078006	Metagenome	117	N
F085718	Metagenome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169611_10325210	F085718	AGGAGG	MVIEFDFEIYKNGDYDKVYLRNGKEARVLCDNGKGNSPMVVMIEDDKADDYIILRYNETGRRNINGQSDLDLMLSVKEREPELWVVVISYMDNKDKRQKMVLPNFFSRDIRGYIYLQGSSKSNVSYYVGRLEKDGCFDELCEKIRVKRDRIYNMEIISLSDDETAV
Ga0169611_1032528	F078006	N/A	MIRGQFPAPWHNLNVSSMEDNILKRAAAELKEAGCRVFAWHDDTYNRGWSKGDYIMLYYAFPDSPNIGYLSHGEYGMSVAYSRAYIPSRGSGSGCCIKEEATFDLATALDVMNGPLPRWCRSYGVYPKQYDNIDKWYNSDNHNKKLFKEI