Scaffold Ga0169611_100277

Overview

Basic Information

• Taxon OID: 3300029058
• Scaffold ID: Ga0169611_100277
• Source Dataset Name: Human fecal microbial communities from mother in Denmark - 268_M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 63329
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (35.09%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F050794	Metagenome	145	N
F064725	Metagenome	128	N
F075481	Metagenome	119	N
F077313	Metagenome	117	N
F089590	Metagenome	109	N
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169611_10027712	F050794	N/A	MAPVGTLYIMQLDAFLHRKIMQDLRIQRVKVLMMLYTSNYFVDVRQKQLLDHTYALSRDQAFDYMTEFNKRLSDKVGIKCTMDILLPTDDDNANIIIEHNGIIKKLMREAEKLELDTDAIKAMMRDLLNELKDDIDLNILIFDVSLLLIKYNLFRLEAITEQEFKGSFVRMDSRNMEIKKLTLSDIKKVVMMMEDRYDYALYMTEEYN
Ga0169611_10027715	F077313	N/A	MSKYVIKRKIPKYQEAGEVTPIMPGNVVGLQGIGVEPLVSSTQIGFDIQQPDINTIDTSDLSALVDSNKKVDKSGSTDVFDFTTIPYYGADDIGSRFTQMGRGIGRMRSEGYGDLSTRAKTANTITTIASGISGIMGLARNVVSGIASEKGTRTNIRLAQEREARQRRQSQMQYKDGGGVYLGPNNRFDSGSLTGEYLYPLPKSMEDQANVEVEKGEYVTQPGEAPMEAMGQKHADGGTPVSLEQGTKVITDDTTIEPDFAKYIRDTYGIKATPKDTYATLMDRYKAKIGLKSAYDDQKKALEKLKKNDKIDDENTRRLNASVLSKVINDSNDTVNGLEGRFTDFANVIYKEQEDRKMKKDEDTYFAKGGEIDNIISRSMKEYGLTEDDVAEAKKELLKKVAGIRQKMEKGGSSLFDYLLTFRPVENKYNNKDNTFGYQRQGQDGSYGGINADERLDYYKTFNPVAYEAYMNATGNTKARALQDAIYGQTSGWMGLATAENSIIANAEALRDYTTLVSFGGEDSQGNYPEDKKASYHDRMRDNKFGQYSSSRPMIGLDVVTEEQHKALNDAGITHFSQLFSDKNKDIVNNILGEDMLKMQALRSMKGMEGLDFILDPHKVAPGPMDIGDVEDPDVKLDMPELIDPNTLPKTNTNAGKSNGGNGGRNIVGGGLDFPEVFRMTPGAVTTEGLERHYAPTVDPVLRSADQYMVEANRAFQSQLDQMGNVPDSQRGALSSNLQAIMSFNIGKYINEVEQGNVAQRTWADNVNSQSWANTYDKNIAQRQAYLQRILQGLAINDENWARYFDSVNDEIQQKWNTATTMNTLRSIFGDVKIGPNGQLIADPQGDILSYRRLYPAQEVTKGKKG
Ga0169611_10027726	F064725	N/A	VTIKGLLAEIKADLHKYDDSGAIDTSSVYRWAEIALKRFGGVIAIMSEAVIKTSNKQAVLPSDFFDMLDAYRCEPLVCEIPGGDKVKADLQHEIGWVERTERGFRWNSCTECCKEEFEKTITEKIYIGSHEVRFHYHHPVRLSIGRGLRRDCAADKYRDKYAWDNYDITISGNTMYTGFDGFIYIVYRATPKDEDGLPYIPETDLGYLEDYVETYIKMKIFENAAVNGLIQGAGDAYKLYAQQEPGKFARAMKELKMSMITLNDYRELAEDNRRRMLSYERMWPNAFDKYIKII
Ga0169611_10027743	F106193	N/A	MGCNTCKEKALRAERERIERSMMNRASSTVVSDMEYASRSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIRDLPYGCPPDEEVQEMRKEILDGRSKYIKP
Ga0169611_10027748	F075481	AGAAGG	MMRLRASLRAIVCLGLSLFLSSCGSRRQVSDTTIDDRLISRIETMINEVIDRRIVEVKTSDLKADIIITDRRFDTDKDIDPATGERPELSRTDTHIVIDRRDSTVVADSIGVNKTKVNIEDVDKRTDIKHKDVDDKKESRWPIAIIFISVLGILVMLFVLLKRLGVIR
Ga0169611_10027749	F089590	N/A	MGNKSMIDKIGALWNIAIAYGTSCWAYFQPVHHLLEVLLIVLLANFLVRLIQSARKWKVRRSRKRRFSLSRWFREVRLVGILKEFLLSCFIVMTLCVIYKTLYPIEEQDASVILSVTKYGVYAALVAYVMLLLNTIGDTFPDVYLVKVFKIIFSRVNILKMFGTTKDLPDDVMEDIKKVANDEVKSKS
Ga0169611_10027751	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYNDDYNYVPDPVVSNSFNTFVEFRSIKPGMANVDWGDGIKEQFPMTKVQGQDDYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPVDNHAYADGRKDVQRAVSIDFTCDIYYANIQVCKMTAFPIVDIPGLEFLVVSHTMYANDGIPVDKLSRSNKLIYIDLSNVGQRMTKMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELPSCYLDRYIKEFNDLPKLSTLNITPGPSDMWNYFDLNTLPLFEVDKINPSIKTLTIFDDWISGERRTEWNDNNMSGRGLENLTSLSLSHSNGMRMDRIPDYIYEMRGITWFNVNASTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYDAIYPTENQRPSGTEQAPEGFVKGQSNGSPATPMEKIYVLKNNYAQRWTIKPA