Scaffold Ga0169665

Basic Information
Taxon OID	3300029053 Open in IMG/M
Scaffold ID	Ga0169665_101385 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from mother in Denmark - 345_M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029053 Open in IMG/M

Scaffold ID

Ga0169665_101385 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from mother in Denmark - 345_M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	15806
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (33.33%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

15806

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (33.33%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location
Location Name	Denmark
Coordinates	Lat. (^o)	55.678	Long. (^o)	12.531	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Denmark

Coordinates

Lat. (^o)

55.678

Long. (^o)

12.531

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F075481	Metagenome	119	N
F089590	Metagenome	109	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0169665_10138510	F089590	AGG	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDAFSDAYLVKVFKAVLKRINVFKMFSFSKNIPDETFDDIRRIADDEVKDKS
Ga0169665_10138511	F075481	AGGAG	MMRLRISLRAIVCLGLSLFLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIRTSDLNADIVITERKFDTTKEVDPSTGERPVSSQTDAHIVIGRRDSTVTTDSLGVDKTITGIEDIDKKTDIKHKDIDDKEESRWPMAIIFMSILGILVVLFVLLKRFGLIK
Ga0169665_1013858	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNYYTDDYNYVPDPVVGNSYNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVQGKDNYRIIFRSLAIQHRKNPNTTWWFRKEDGSQYVPIDNHAYADGRRDVQRAVSIDFTCNIYYANIQICKMTAFPIVDIPGLEFLIVSHTKYVNDGIPVDKLSRSKKLIYIDLQNIGQRMTVIPEAITSKTEVYYLNMFNMLDLRDIEASGIRNIKNMKKIEDLNLSSCYLDRYIKEFNDLPKLKTLNITPGPSDMWNYFDLNTIPSFEVDKINPIITTFGFLEDWMASGRRTGWNDDNMFGRGLEYLTGFSAFSCSSLRMDKLPDYIYEMRAITWFNVNASTHNQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYSLSVSMYNAIYPTENQRPSGTEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQRWTIKPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0169665_101385

Overview

Ecosystem & Geography

Associated Families

Sequences