Scaffold Ga0169758

Basic Information
Taxon OID	3300029052 Open in IMG/M
Scaffold ID	Ga0169758_100029 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from mother in Denmark - 536_M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029052 Open in IMG/M

Scaffold ID

Ga0169758_100029 Open in IMG/M

Source Dataset Name

Human fecal microbial communities from mother in Denmark - 536_M

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Beijing Genomics Institute (BGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	84798
Total Scaffold Genes	111 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (23.42%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

84798

Total Scaffold Genes

111 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

26 (23.42%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Ecosystem

Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location
Location Name	Denmark
Coordinates	Lat. (^o)	55.678	Long. (^o)	12.531	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Denmark

Coordinates

Lat. (^o)

55.678

Long. (^o)

12.531

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F032312	Metagenome / Metatranscriptome	180	N
F060985	Metagenome / Metatranscriptome	132	N
F064817	Metagenome	128	N
F094005	Metagenome / Metatranscriptome	106	N
F101357	Metagenome / Metatranscriptome	102	N
F105375	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169758_100029101	F105375	N/A	MKNNETFQTTQHLDKLVTNLGLQIQELFSLDLEEILNYSNNLMNLLVNAYVENQCLALSAMISKQDGFAIYSFLFQTSDTSKGTADALVNFAMNFTDGEANIKSITINGISSNIMQITFT
Ga0169758_100029103	F064817	N/A	MLDIMNIKNLFNRFRKQEPELSYSLNLIYLEDTKIVFNPNIQCAKDLENYLSDYMRLFGMYSDKPYVLIYQEYKNRYWVYDKEPYLLYYKVPLIVNLSRKLSGRSSMVITKEKYQAAKDLVPVHKVSDRFKVPEYITEVFTDIWYKCQGYMDTDHANLEDILELMHYNWLKEFESFVFKRNYDTDMLFLNHSLTYILDQAEEEGRRICIQNIIERNINQENQDENETI
Ga0169758_10002988	F094005	N/A	MKKEIVKLKEGNSVIYQDKTLMEKANVVSIDKKNGTAILSNKVIITRTTNLDGQFTRLDGKGNAIILPCTTENEQKYNAFVAYHQSKKSLEAIKKWLDDNGKHKDDETLEKVITLDKKLKKLIEKLNE
Ga0169758_10002990	F032312	N/A	MSKIKDYDEDLSAPKLLRERARDSKGRFIKKDLPPYLGAEQVLKPKNYYHFDSHGNYKGSSMNFDALVCLGFTWFKLLGVALMILLWPIVFIYALHDGIEGYPFKKYAIPYIFILVAWFIIFLYGLVS
Ga0169758_10002991	F060985	GGA	MSNIDEEAKNNFTIEMRIFENYEKVKYEIIKVIDFLRHAETNLGMCKIFDNQNHEFWHSVIKPWFKPERFGITHLWFSSGFSHIGYGEYHTIRGNRWLKTLIDKIDREDRIFGYWFPPYKKYIPHRIKVLKLALKDLERIKEEYGKD
Ga0169758_10002998	F101357	N/A	MNLNNITTALKTGITIYQYEQWQNTGSVNLMQKESHMLSKVWLKTNIHNPDSLDKPFIQLSATFTSEFDIQEYNEWLNANQYKLYPLLLDILKISLKDSFCNYSNASNIHYEGGKFPSMLTIQLFNLEF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0169758_100029

Overview

Ecosystem & Geography

Associated Families

Sequences