Scaffold Ga0169645_108288

Overview

Basic Information

• Taxon OID: 3300029038
• Scaffold ID: Ga0169645_108288
• Source Dataset Name: Human fecal microbial communities from mother in Denmark - 332_M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1709
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044555	Metagenome / Metatranscriptome	154	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169645_1082881	F044555	N/A	MKTTNPSSRITISQNGNQILTCKVYKEPNNILSMSNEEILELISGLDYMGNIPTVPDLEKPIQIQVSTIRQIPLEQNKEVQTKIKEIIYNNLYDTLIDELKGTISRFQAQYNIQEINPYLQDIFQNP