Scaffold Ga0169625_100389

Overview

Basic Information

• Taxon OID: 3300029010
• Scaffold ID: Ga0169625_100389
• Source Dataset Name: Human fecal microbial communities from mother in Denmark - 275_M
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Beijing Genomics Institute (BGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42351
• Total Scaffold Genes: 44
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (47.73%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Host-Associated → Human Host-Associated Microbial Communities From Fecal Samples Of Mother And Infant In Denmark

Source Dataset Sampling Location

• Location Name: Denmark
• Coordinates
  • Lat. (^o): 55.678
  • Long. (^o): 12.531

Associated Families

Family	Category	Number of Sequences	3D Structure?
F042095	Metagenome	159	N
F075481	Metagenome	119	N
F089590	Metagenome	109	N
F089591	Metagenome	109	N
F089592	Metagenome	109	N
F106193	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0169625_10038913	F089592	N/A	MKEILKSRKVLAEVNGFNIMSDTLYEVVGKHDGSAPQAFQDANIAKAPFPENATHVCCPWDDFSKAYNTGFYPRSRCYNGLDKNEIDRLVKQRVDNIMKPFEEMSQMDLSQTNLEFWDDAKDKIFMGKVYNTANTVDLFYLYLAVFSGMLTPQEMDGDPIFMNSMFCFVEKDNMKDFVQQREINKMNISYKFISALKKGGDDRQAVIDLLLYIGIVTRPDFTEDEYYTGSLSNWMNEKKTNVDYLLDIWDRSLEGDFKEVLEFYRIVNVLQRNGRINMTPSGLQYNGQIIGPDVRTSAEFLATKKDFINIKANVLDEYEEIISMSNIDDKSKTKKVKDIKKKDDVEEGDKVKEE
Ga0169625_10038914	F089591	AGGAGG	MTIQEAYLRSLQKNEQNLANGGIKLDPGRFVLLFNEAQDRLVKYYLNRKDDETIRSIQNLLVYWMSLDNAGRMDDPESTSFNLPDDYLWFSNIKGVFSYKGCEATDFVMWEAKNENIHELLGDDNNRPSYDYRETFYSIGNGKVVVYESGFRTEEVKMTYYRRPVRVDLSGYINAAGIQSTDIDPELPDYLVEEILDMVAKQFSLNENELNRYSMDKDNVASFK
Ga0169625_10038922	F042095	N/A	MAKTLYKYEASSNKFVWFTTWDRALRNFYNDDYNYVPDPVVDNPFNTYVEFRSRKPGMANVDWGDGIKEQFPMTKVQGQDNYRIIFRSLAIQYRKNPNTTWWFRKEDGSQYVPVDNHAYADGRRDVQRAVSIDFTCDIYYANIQVCRMTAFPIVDIPGLEFLVVSHTMYVNDGIPVDKLSRSNKLIYIDLSNVGQRMTVMPEAITSKTEVYYLNMFNMLDLRDIESSGIRNIKNMKNLQTLELSSCYLDRYIKEFNDLPKLTSLNITQGPSDMWNYFDINTLPFFEVDKINPNITDFIFLDDWKNGERRTGWNDDNMSGRGLDHIINFHASHSNGIRVDKLPDYIYEMRSITRFGINYSTHSQKRSDDFVNSFYDLVVGWDQITMTSVAKDGKRNQFYGLNVSMYGSIYPDENQRPTGQEQAPEGFVKGSSNGSPATPMEKIYVLKNNYAQKWTIKPA
Ga0169625_10038924	F089590	AGG	MKDKDMIERVGALWNIALAYGASCWAYFQPVHHLLTVLLIVLIANFLARLAQSVRGWKLRRSRRRRFSFKRWFREVRFTDILKEFALSCFIVMTLCVIYKTLYPIEEEASMILTVTKYGVYIALVGYVMLFLNTIGDTFADAYLVKVFKAVFKRINVFKMFSFSKNIPDETFDDIKKIADDEVKDKS
Ga0169625_10038925	F075481	AGAAG	MMRLRISLKAVFCLGLSLSLSSCGSRRQVSDTSIDNRLISRIETMIDEVMDRKIVEIKTSDLNADIVITERKFDTDKDVDPATGERPVSSQTDTHIVIGRRDSTVTADSLGIDKTITGIEDIDKKTDIEHKDVDDKKESRWPIAITSISVLLILLVLIYLLKKMKVL
Ga0169625_10038932	F106193	AGGCGG	MRSLIVSESFLRWLLIAWIVKYKNIVMGCNTCKEKALKAERERIERSMMNRVSSTVISDREYASKSTAGCMVMLDPLKTMERDVVSIYKQTRTIGDVGIVYLNMQKKIREWIKNLPYGCPPDEEVQEMRKEILDGRAIHIKP