NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310376_1057261

Scaffold Ga0310376_1057261


Overview

Basic Information
Taxon OID3300028916 Open in IMG/M
Scaffold IDGa0310376_1057261 Open in IMG/M
Source Dataset NameLab enriched sediment microbial communities from oil refinery in Oklahoma, USA. Combined Assembly of Gp0220779, Gp0324998
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Toronto, Beijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)743
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Anaerobic Enrichment Culture → Metagenomes From Methanogenic Benzene-Degrading Culture

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)36.0Long. (o)-97.0Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020377Metagenome224Y

Sequences

Protein IDFamilyRBSSequence
Ga0310376_10572611F020377GAGGMSLSRWWRERHFERDFRRSVKRDLARIGKDYEAKFKSLQTGNDFDAAMSAYLKACRLPDLRLETLRSRRLQNRADAAGIDLPREWWEHDEEYDLWYLTPDGRRQLKRRLTQERLWTVKQWLQVLTPIVALAAGLTGVIIGLLAMWRWP

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