NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265300_10001424

Scaffold Ga0265300_10001424


Overview

Basic Information
Taxon OID3300028914 Open in IMG/M
Scaffold IDGa0265300_10001424 Open in IMG/M
Source Dataset NameBovine rumen microbial communities from tropical cattle in Woodstock, Queensland, Australia - Gonzalo_03
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22442
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (95.92%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameAustralia: Woodstock, Queensland
CoordinatesLat. (o)-19.6574Long. (o)146.8351Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012184Metagenome / Metatranscriptome282Y
F086398Metagenome / Metatranscriptome110Y
F087968Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0265300_1000142415F087968AGGCGGMVKITKTHARTLYNAGETIMIIPNKMRTDSFMANWTSKPADDPNADFDKLCNAISYYNCSPETGMGLAYYAKEL
Ga0265300_1000142417F086398AGGAGGMNEQMTYHVAVQRADRVKHIIDDIGLGQIVKEKYTRFSLDQAGRWICLTDTGITIVKTEDKLKIITMYVTTQKELVAVYGGAKKVPTFLKRKVDHNQSKYTERGKTIWK
Ga0265300_1000142427F012184AGGAGMNKNEILNTILSIPGAKMARNNKTNFVVIPADEGIVKVAVSAALMADTKNHKAFNMDAAIAEYKAWEAETALKEAEKASAPARPKGPNPEAQARRDELDAVISAMPSFTECTATDIMQALEGKVAFTLTPMNVGQSARRLVEKGVLTAGTREGDKKSYYSKA
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