NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302200_10221234

Scaffold Ga0302200_10221234


Overview

Basic Information
Taxon OID3300028909 Open in IMG/M
Scaffold IDGa0302200_10221234 Open in IMG/M
Source Dataset NamePeat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Bog_N3_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)938
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0477Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003389Metagenome489Y
F046134Metagenome151N

Sequences

Protein IDFamilyRBSSequence
Ga0302200_102212341F046134N/ALNIFSPIDGNVLGFPHYRLHRDNISATGPKFPDGTTAQPGMAEAIEIQRQAGHAIYADHLSAMLYGTGPKPARS
Ga0302200_102212342F003389AGGMQITVWSVAADDDNGTHASVHETELAAYRRLIQLTVDSDDKEQVAKAEAFIEAEDLDGLDEWLKAEVIEPLNTYSVDQHKLDVLAASVKAPAEENKHITRRELASVLHGLRLMQEQWEPQMRGCTSIGLHDPLELSEPNSCDHFCDEEDSPLGPDEIDDLCERLNMGFCN

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