Scaffold Ga0302252

Basic Information
Taxon OID	3300028907 Open in IMG/M
Scaffold ID	Ga0302252_1000521 Open in IMG/M
Source Dataset Name	Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Leu
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Enriched activated sludge microbial communities from anaerobic digester in WTTP, New Holstein, Wisconsin, United States - AAG_RA_Leu

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32574
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	43 (84.31%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

32574

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

43 (84.31%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Ecosystem

Engineered → Wastewater → Anaerobic Digestor → Unclassified → Unclassified → Activated Sludge → Active Sludge Microbial Communities Of Municipal Wastewater-Treating Anaerobic Digesters From Various Locations

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	44.11	Long. (^o)	-88.23	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

44.11

Long. (^o)

-88.23

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F067770	Metagenome / Metatranscriptome	125	N
F077341	Metagenome / Metatranscriptome	117	N
F078767	Metagenome / Metatranscriptome	116	N
F099361	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302252_100052118	F099361	GAGG	MNIKNTDSISILIANSGNQKKYYPVSELKEDILADVEADAAFQDIIIQGILGNVAAPVLATESTITEEDVDPAIAIDVTKNTFIDTDSESADNWFIDFGATDLILNTITKVSDTEIEIATTGTAKVGTIRILALKDCFDAPIVDSTVLEIEVQESGE
Ga0302252_100052123	F067770	GAG	MIEFKYNSPIFKLGKISRSEWRELGMSARSEIVKRTRNGVDINHQPFHEYSAATQEYKSGIMQTRGLGSSVVTLQDTGQMHRSLSIEIQANAAILYYADQNRARVALLHQTGGYHLPKREHFGFNKTDGNKYLERIAKLQTEKNKKANK
Ga0302252_100052124	F078767	AGAAGG	MTNQITDITDEILIALQKAGCKTVGILPEVLMFSGNNNPFGFILLNSETTENDNGGILTQLLDISIFIITQSGVNKMKEHCNVLYAAIGEILKSSGLNSKTALVNLEAINWHADMPFVTQLVGDLDIISSINYNIKYMNAR
Ga0302252_100052130	F077341	GGAG	MAEMLWGFGGVKFVYGTTEMELPHCYGKLGFQELKNTWRTKSGNLKVQHKGFIPIITITMWNLGIDGINASNMSSLIQMLNAAKTDGIMIYPRYEYSNDLGYLCILSSDINPEDFSQNISAGQTLELSFIGKQKIDNMPTYTTLEGFYYMVDYWDNYLIDHNGNNLILKG

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0302252_1000521

Overview

Ecosystem & Geography

Associated Families

Sequences