NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308309_10032604

Scaffold Ga0308309_10032604


Overview

Basic Information
Taxon OID3300028906 Open in IMG/M
Scaffold IDGa0308309_10032604 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3590
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004702Metagenome / Metatranscriptome427Y
F019512Metagenome / Metatranscriptome229Y

Sequences

Protein IDFamilyRBSSequence
Ga0308309_100326042F004702AGGAGMTRRSIRNALLVFVMASAALAVGCGGGAEGKYRDPSGTINAEFKDGKAYVALGAYAVDGTYKIDGNKIVARGDFGPMLPSPLIFTVNKDGTIDGPRDTMIPRLEKVK
Ga0308309_100326043F019512AGGAMTVYRATTVIPLAIALAVLLGPIGCGRSSSDSSADEGIPGLTSADREAQSAAMAELQRHWRKGSDGWTTAIVSGSPYAPDHFLRQCRALTIKAMVPQDLSESDKLNGFEWVGRAEFQPTSCREGGGQAGLVLDGMSNVVVNKQSGGWSQWVDFTPGPLRFAREKGRWQFNWDPTYLRGTLPGPQDFANAGVQ
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