Scaffold Ga0308309_10024216

Overview

Basic Information

• Taxon OID: 3300028906
• Scaffold ID: Ga0308309_10024216
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4059
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (57.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006944	Metagenome / Metatranscriptome	361	Y
F018767	Metagenome / Metatranscriptome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308309_100242163	F018767	GGAGG	MQKAHLYEAILLVNRGVHEAVRGLERLKRARDSQLDSSCFDEELVFFEDHRARLNSYFCTTIQRAEQHDAVRFEIRHREYETNTLDEVQVYRDVRTVEDCRRIEGKPSKVRFFTQEEQRKWERQYPTARDPQSEPQSSSGDQP
Ga0308309_100242165	F006944	GAGG	MKQKQAAETPKKDLPTPGKQYPGVHGKIVDWAEHVFEEGMMYVRVRFTDQTELCWTLQTAHVIREADLSDWKTGDFKQLKLYAENEIGWPE