NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308309_10008148

Scaffold Ga0308309_10008148


Overview

Basic Information
Taxon OID3300028906 Open in IMG/M
Scaffold IDGa0308309_10008148 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6440
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000512Metagenome / Metatranscriptome1064Y
F000696Metagenome / Metatranscriptome931Y
F000739Metagenome / Metatranscriptome913Y
F006480Metagenome / Metatranscriptome372Y

Sequences

Protein IDFamilyRBSSequence
Ga0308309_100081485F006480GAGMRRAVVGGVGLLLCGVIAAREKADPLVFVFVRVDREKDVAVLRPMIAPDIGVQLDSGSRNLEQGKVLNCASSVRIHSAIVEAQLAQVTDLLLDCGEQKFVVKTLDFTPKRK
Ga0308309_100081486F000512N/AMIRLLRETHETPENVARRLERAGGINRFGQPNYRAVWGWNRLAWIGGKFEDHDPSTGSLLREVIELRQEPKYPAVNRWHIERWVPPEVYGSPRTWYAQTIERENGVSIPALGPYPSRGEYEHCFTLEGPGGEFVQLTPTAAEHIARAIEFSRHVPRSRKRSSIDDRERREDRAYDEWAFDKLDDAVPAFHQRPFVTIL
Ga0308309_100081488F000739GAGGMSHLNIWLKGVFAAAISGAAGGVLTGFAAVGIDPQHFNLQTGMGATLRIAAAAALINGIIGVAAYLQKSPLPTD
Ga0308309_100081489F000696AGAAGGMPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTVLLPYANSAYRKLQRALGNAGGGGFIQDDVLLVVTAVAQTDTSLQVSITDATAPPNQLPTDLLVPVKIWERPNGSTQDFLEMVDLTQHGGLPSRVQDVTLGVWEWRADGLYFLGATQDTQIRLRYSKAYPDFTDATSPVLVRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSARSGYTPF
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Institute for Fundamental Biomedical Research
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