NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308309_10003878

Scaffold Ga0308309_10003878


Overview

Basic Information
Taxon OID3300028906 Open in IMG/M
Scaffold IDGa0308309_10003878 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8995
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (70.59%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000528Metagenome / Metatranscriptome1047Y
F026941Metagenome196Y
F078992Metagenome116Y
F084520Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0308309_1000387812F026941AGGAMKMDAYADIYLWNRNVDRLIRVLQRMEIFSIRPKQEMKAYEVRLEEIRAALNADFAEAMATRERSDQTRLTRQRTAWEQKSADGNTVNPRH
Ga0308309_1000387813F000528N/AMGEYKVQLGLRVRQALRAELEQFAAREKRKLGNIGEVILEWAFEQLKAVGSTERLLKYKIPPSARDAKQR
Ga0308309_1000387817F084520AGGAVSGLIPIVLLGTLILIFSGRLLAQWSRQSHTRDVTIEDYSQARAALDSVFAETAAIKRIFASEDMEFISQAGTSDVQRFFLKERKRLSIQWVRLTQKQVAHLMDLHLKLASYTYEPSPKSEGKLTVNYLCFILASNGALVLLWLFGPFKAVRIVAYTVRAAEYFCSEFSLRLERTDPVKLSSARQLRSV
Ga0308309_100038788F078992GGAGGMDGQAIRKQEVVAIKSTSGDPYNKTVEEPKLNPSTTHDCRKFEVRCHAGNAGHLEVASDAVSVKVGQRIRREGKEEFWGSLLVECKEQDDGSLAVEVVVFHPDWDEPLRIASIQSSPPDGNLERSTLRFDFEQKRL
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