Scaffold Ga0308309_10000648

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308309_10000648

Scaffold Ga0308309_10000648

Overview

Basic Information
Taxon OID	3300028906 Open in IMG/M
Scaffold ID	Ga0308309_10000648 Open in IMG/M
Source Dataset Name	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21599
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001450	Metagenome / Metatranscriptome	692	Y
F004287	Metagenome / Metatranscriptome	445	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308309_100006482	F004287	AGGA	LNSAPEVKHSARPAPISGGRGETLIDTRPKSDTSATVAIASISDQDWYVSRTHGVYHIPARPKAEMAASADLEPGASAPPYALLLITSRGDALDLGDNRRFPFTIGAREIADDLLQDLHDHGIFVCAGPRPTAEELAAAAARRDAFYHRLVADGDTMWARGHSFREISDLHRRAAISLGIEREWAYVPMRMVDCPACGEKLKPGVAVCRHCRAILNAVKAAEHGLTMPASHKSAHGA
Ga0308309_100006485	F001450	GGA	MIRVLREIHHAPSSINERVARSGGANRFGEPNYRIVWGGARLTWIGGRWTDRDAHGNMLRECIEFRRVPKYLPENRWHIERWMPPESYGSPETWRAQTTEVEDGIRVPALGPYPSRGEYEHCFTLQSTSGEFLPLTAAACDWIVRAIEWSRRQPRRANRGAIASRETRRAADWERAADDMLDDSIPAFHGDAFVSL

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