NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308309_10000592

Scaffold Ga0308309_10000592


Overview

Basic Information
Taxon OID3300028906 Open in IMG/M
Scaffold IDGa0308309_10000592 Open in IMG/M
Source Dataset NameWarmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22786
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (69.23%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location NameUSA: New Hampshire, Hubbard Brook experimental Forest
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F007429Metagenome / Metatranscriptome351Y
F033134Metagenome178Y
F037842Metagenome / Metatranscriptome167N
F044617Metagenome / Metatranscriptome154N
F065986Metagenome127N

Sequences

Protein IDFamilyRBSSequence
Ga0308309_1000059216F044617AGGAMNTSPKESRQMPTITAMTAEERRKLDERIRDKHQKLRNKYPEIYGKVVDWIHHSVEDGTLYICIRFQDKTDFALEFSPQIVRVGTELCNSATGDFDVIRNYYKEERE
Ga0308309_1000059217F065986GGAMSNIAKRQGRMIRKGKEVRFGSVHIDLIGPTELLHNREAKGAAIDFLRTEILASKDWLKDCAKISPSLKRFRLISIRTQNRLKG
Ga0308309_1000059219F037842AGGAGGLKQKTVKAKGEGVEYPALSGKVTRQVRFVNDEDYTALTIEFDDSTLVSFRFKASIAFSIDPELSTVKGGNIVRWRELKTRPILRRVARK
Ga0308309_1000059220F033134AGGAMEQEHESKQLITFNSLHIEVLGPRALGNSQPAIRGVTEFLHAAELDVRNLLRERAETSPILEGFRLRFG
Ga0308309_1000059221F007233GGAGMANRKQKEHQRHLNLDTFSEGIKGKVLEAVSISNELECRYISLEFEDKTELTITLDTRLTGKLELFDCKTGDHRLVRKIGLIPDDAPVWRPKD
Ga0308309_100005928F007429AGGVDAVFYPVALNVIPMKKKQKPAKKRRPAIKPTAQNERLKGWNEIASFLGQPVAVAQRWARSGMPVTREGRFMYASREELSGYLGREAGLNVPVHIVTENMDLSADLKLALAHARAGKHNKKKKAKR
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