Scaffold Ga0308309_10000211

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0308309_10000211

Scaffold Ga0308309_10000211

Overview

Basic Information
Taxon OID	3300028906 Open in IMG/M
Scaffold ID	Ga0308309_10000211 Open in IMG/M
Source Dataset Name	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	42742
Total Scaffold Genes	40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	23 (57.50%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)		Long. (^o)		Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003631	Metagenome / Metatranscriptome	476	Y
F004157	Metagenome / Metatranscriptome	450	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308309_100002114	F003631	GGA	MLNLAWVLLALPAYWLWRRSGGARLGRGMSSVQCLLALGCVLVLLFPVISASDDLHAMGAEMEDSTISKRTVRAAGSDKNSAWVNRLQAPPATVASARWVAVPEVGLLDVSVACLPPLAGPSVFDGGRAPPFSLLG
Ga0308309_100002115	F004157	GGAGG	MTRLVCVLVAAMGATACGLAGPESYLSAADETMADRTAQDGASQDKASRGQTSQGQTSQEQDEGLVIEPGELPSTYPRGPYQVNFHARGNYVPTLHWKVEKGALPPGITLDDNGALRGEAERAGEFQFVVVVRDGGKPQQAVQRGFVIKVVEAMTVEWKVPAHVTANRIDGSVQVSNTTADDMDLTFEVKAVAENGRATEIGYQHFPLTRGTIGMTLPFGETLPHGTYVVYVDVNGEVAKRNAIYKQEMKTPGALQVVVGP

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