Scaffold Ga0308309

Basic Information
Taxon OID	3300028906 Open in IMG/M
Scaffold ID	Ga0308309_10000120 Open in IMG/M
Source Dataset Name	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	67736
Total Scaffold Genes	63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	50 (79.37%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

67736

Total Scaffold Genes

63 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

50 (79.37%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location
Location Name	USA: New Hampshire, Hubbard Brook experimental Forest
Coordinates	Lat. (^o)	Long. (^o)	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: New Hampshire, Hubbard Brook experimental Forest

Coordinates

Lat. (^o)

Long. (^o)

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000175	Metagenome / Metatranscriptome	1756	Y
F008970	Metagenome / Metatranscriptome	325	Y
F044616	Metagenome	154	Y
F047848	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308309_1000012024	F044616	AGGAG	MGSEISAEKIECPLCSGAGELTRAGILDRLGVKDFARVAQLSAEAAFRLLQQKHSIDQQSAWSRFETELAKRTAEMREQHKDELRLAHSVKETLTRRVEDCLREVSELREKNHQLEAEMAKVARVGKREEMDFADEVRTWAGIWISDKLPRNGDFILAYRAPNGDPLEPRILIDNKDKSAIAEGDIDKLVRDCKERSIPVAALVARDESQLRQSDREARWNRKDGVWLLRTTRPWIARDLDLLKPIFERMRVQGFDLLEKNTVLAEELRRTFPEIDRIEKELGKAARAIQSVSALVVRYRERLRELCDSSPASKIGSIPERDDSVPTATN
Ga0308309_1000012026	F047848	AGGAGG	MDFVHVFVLRTLCVGENGEIKSRNVAVTFDMFEAEDHRNKGVENGYDTFVVPGDWREEQ
Ga0308309_1000012035	F000175	AGG	VLLIAASILAARKLAQFDSGARVPATVSAIADAVRWAERIMEEIDRRHPSPTGSNHRNG
Ga0308309_1000012061	F008970	GAG	MFTDPSHPAPLQEHPAEHQIELLLADTWNQPLWKHLLGEVRDKFAPEKLPPLQLTSRPVDVGMLQSDRVSVPWFRTVFSNLGDVISPEVLPPLELESRPVDVDELISDMMGHGWWTSLLRNLADRVAPERMAPLELTSKPMDLGLGSRSMLLARWSSVISTPKVFLPDKPKTEARLSQPLAAPAKPKPDPVEVEAVHVLEADLKRDLRRSIFRLRLWVSFAVVEVLVLIWSSFWLK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308309_10000120

Overview

Ecosystem & Geography

Associated Families

Sequences