Scaffold Ga0308309_10000027

Overview

Basic Information

• Taxon OID: 3300028906
• Scaffold ID: Ga0308309_10000027
• Source Dataset Name: Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 145679
• Total Scaffold Genes: 112
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 88 (78.57%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil → Soil Microbial Communities From The Hubbard Brook Experimental Forest, New Hampshire, Under Manipulated Climate Change Conditions.

Source Dataset Sampling Location

• Location Name: USA: New Hampshire, Hubbard Brook experimental Forest
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000410	Metagenome / Metatranscriptome	1170	Y
F001589	Metagenome / Metatranscriptome	667	Y
F011955	Metagenome / Metatranscriptome	285	Y
F023438	Metagenome / Metatranscriptome	210	Y
F026629	Metagenome	197	Y
F043510	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308309_1000002729	F026629	N/A	MKILLVHFEDDPGKGPWASVRWDHVVDLGLGGKNSYARWIRQLRCPVTSLDSLRNGFDDFRRVRDMLGVGCGRLIDEHGLDWWEIMSILLHGELETLLLLQRFLRTVSAGDEVYVSRPGLHASLLQCLLRARVSVFPLRRGAQKGGLGHYVRVSNKLSAPQMIDVFWDKYDAGYQFRGRLARKRQPSTRPVVLLPTAYVNVSRTGIAYANTFPEEDFLLVTTRQSGWIQDPPRNVAAAWLSSYASVRDRRGEIADLENRWRSLLDELGGVAEFEILNRLGYMDSFPRRFRHGLEVRDAWRNVLDTEPVQAVLCADDSNPYTRIPLLLARARELPNIACHHGALDGRYVFKRTYGDVIWAKGKMEEDYLVRSCGVPGERVEIGAPALPVNWNGVEPSNRQTFRPNLLFISEAFDVSGGRPEEFYRDILPPLADLALATGRKLIVKLHPAESERERASILSRILSAEQRSATEIVSGPLTEDLLASAWFGITILSTVAMECAIRGIPCFLCKWLESRSYGYVEQFIRFGVGIGLNDPGEIEKIPQYLEQRAVSAEVSENCWQAAGAGRLRELLTTSHGTCTTATG
Ga0308309_1000002735	F043510	N/A	MSESREVRLPADLCAAVEDKFGGTFRGMDELVVFLLQELIRGDTLDLDRADQAVVEQRLRDLGYM
Ga0308309_1000002747	F011955	GAGG	MTTPGVSPPERTPRADLVAIGEKDLADLACFIAAQSGRTSGTVEAHLRWFLLENPARRPQDPLGFGLRSAGQFVGCILCSPQAFRFEKEKILLMGSSLFYVDDRYRGYGGRIFLQYCRLGTQWPLFGTSANAEAAALWKAAGASPISGSDGELFGVLRWPPVVEEFVHRRNPSHVLSRLAGSPISNLAGLLRRLKIDTGTSEVLQSLTSAEQVNDLPLHQSSARLTAMRDLPYIRWRYFSGRDATVAVFAFRSGRPNQEILVTVNQRTRGYRGQINTLNVLDVYPEVAPDEWVRIVGALIARYKAIVDAVVLRCQSPARQKVFCEGGFQRRIFDAPNGWFLDKAKLLPTHDWYPVPADGDGLI
Ga0308309_1000002764	F001589	GAG	MRPPSIFVLCVVSLLLLSSCSPRDFLTHRLAADLIAGSNTFRAQQPFQLRTGVVSNKDYLSADYLVLQHRGWISAANAACPPALAPPPCWDVTLTPSGVDTFQSLIAPGDAEKQSFTIPAARRELVAITGIAKQGNAADVEFTWRWIPLNEVGAVLYTADLRYRSIARFRDYDNGWRLVEGAAHPGQPLDESLRNAEPEQ
Ga0308309_1000002780	F000410	GGAGG	MAMSRRLVWIEQPQFRGFGCSECAWVFNPSGAPSGKTFDEMMRNFELQRDKAFRLHVCADHPRAKGTSGKPRE
Ga0308309_1000002790	F023438	N/A	MLNNGRVNPEELTLRHILSVRCPMCRAKPKEQCTLSTGHPSAKTHLARGLAAASAPRPENSGRAALRILKAMTTRGLHALFQHK