Basic Information | |
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Taxon OID | 3300028889 Open in IMG/M |
Scaffold ID | Ga0247827_11183962 Open in IMG/M |
Source Dataset Name | Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 529 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil → Soil Microbial Communities From Agricultural Site In Penn Yan, New York, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: New York | |||||||
Coordinates | Lat. (o) | 42.673 | Long. (o) | -77.032 | Alt. (m) | Depth (m) | 0 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F015969 | Metagenome / Metatranscriptome | 250 | N |
Protein ID | Family | RBS | Sequence |
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Ga0247827_111839621 | F015969 | N/A | MTPRSPEARAPLTGIWLSAEAVQTPIETLVIDMLASNLPSRVLREAELEELRRGAKLADVALEYLGLRTISVDGDGDIPLRVVASHSPRDSWRQALVLPEGDRPIGILINTADAGPVVLIHEVFDSFAETEKELVRRY |
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