NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247609_10466962

Scaffold Ga0247609_10466962


Overview

Basic Information
Taxon OID3300028888 Open in IMG/M
Scaffold IDGa0247609_10466962 Open in IMG/M
Source Dataset NameSheep rumen microbial communities from Palmerston North, Manawatu-Wanganui, New Zealand - 1728 DNA GHGlow gp2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1337
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Ciliophora(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location
Location NameNew Zealand: Palmerston North, Manawatu-Wanganui
CoordinatesLat. (o)-40.3794Long. (o)175.6106Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011198Metagenome / Metatranscriptome294Y

Sequences

Protein IDFamilyRBSSequence
Ga0247609_104669621F011198N/AMEKYRPKSAMINQGNIKNNKYFSNRQNNDAFSRTFFIQEKDKGDKYFRSTRVGSCRKIVVRNGIPIALTFKVKNPRGEPMTHFNYTLKQLPKNPSSYYIDYCTKKRQNHLGMDKKPLVPYNPNHTRSQLPNDISFRVIRNYSVFEIGNEGLVNRKQWLSTYKDSYRPSSVK
Ga0247609_104669623F011198N/AIKNNKYFSNRQNNDAFSRTFFIQEKDKGDKYFRSTRVGSCRKIVVRNGIPIALTFKVKNPRGEPMTHFNYTLKQLPKNPSSYFIDYCTKKRQNHLGMDKKPLVPYNPNHTRSQLPNDISFRVIRNYSVFEIGNEGLVNRKQWLSTYKDSYRPSSVKRISNPGILSDLAKRNHYKLNNIEY

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