Scaffold Ga0256407_10001208

Overview

Basic Information

• Taxon OID: 3300028886
• Scaffold ID: Ga0256407_10001208
• Source Dataset Name: Bovine rumen microbial communities from Lethbridge, Alberta, Canada - RJG_04
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56038
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (32.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Mammals → Digestive System → Foregut → Rumen → Rumen → Rumen Microbial Communities From Sheep, Dairy Cows And Beef Cattle From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Alberta
• Coordinates
  • Lat. (^o): 49.6935
  • Long. (^o): -112.8418

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043727	Metagenome	155	Y
F093002	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256407_1000120828	F093002	N/A	MTEQEFDQQVWRRFDVVTTDTGIETTVMNVCFSTRSVRIYVKNAPAEWLPFKRIVAHTTRKGDTADEGTIIEELHNRILKQDEKIARLENEKAALAEKISRNYLGELLKSVNMLKEGLTEKKSKLEKIERGLELIVSTLAAINNE
Ga0256407_1000120829	F043727	N/A	MTNKEAIDGWANSIIPAVFRAEDALQKAVPEWKERLAALNAGTSQEEGAKVAKEYCQAIAHIIVTQAIDYEPDGTIDGEADFT